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Occurrence record: GeneticSamples:G47094

MaterialSample of Mus musculus | House Mouse recorded on 2018-02-16

Dataset

Data partner	OZCAM (Online Zoological Collections of Australian Museums) Provider
Data resource	Australian National Wildlife Collection provider for OZCAM
Institution code	Commonwealth Scientific and Industrial Research Organisation Supplied institution code "ANWC"
Collection code	Australian National Wildlife Collection Supplied collection code "GeneticSamples"
Catalog number	G47094
Basis of record	MaterialSample
Preparations	liver
Sex	male
License	CC-BY
Collection ID	urn:lsid:biocol.org:col:34932
Disposition	on loan
Relationship of resource	same individual
Rightsholder	CSIRO
Dataset name	2017-2018 - Holleley FSP experiment
Bibliographic citation	G47094
Associated occurrences	ANWC:ANWC:M37839
Establishment means	captive location
Occurrence status	present
Dataset ID	urn:anwc.csiro.au:collections:172
Abcd identification qualifier	Not provided

Event

Record date	2018-02-16
Date precision	Day
Verbatim event date	16/02/2018

Taxonomy

Scientific name	Mus musculus
Taxon rank	species
Common name	House Mouse
Kingdom	Animalia
Phylum	Chordata
Class	Mammalia
Order	Rodentia
Family	Muridae
Genus	Mus
Species	Mus musculus
Taxonomic issue	No issues
Name match metric	Exact match The supplied name matched the name exactly.
Name parse type	SCIENTIFIC

Geospatial

Country	Australia
State / Province	New South Wales
Locality	Wingecarribee (A)
Locality	Australian BioResource
Latitude	-34.5488
Longitude	150.3742
Geodetic datum	EPSG:4326
Verbatim locality	Australian BioResource
Water body	not applicable
Island	not applicable
Island group	not applicable
Location remarks	Animal House
Coordinate precision	0.001
Coordinate uncertainty in meters	10.0
Verbatim SRS	WGS84
Continent	Australia
County	not applicable
Biome	Terrestrial
Verbatim elevation	683.0 Supplied as 683

Additional properties

loan conditions	approval from ANWC Director
Material sample ID	catalogNumber=G47094&collectionCode=GeneticSamples&institutionCode=ANWC
material sample type	tissue
permit status	not required
permit status qualifier	salvaged; exempt
permit type	not applicable
preparation date	not recorded
preparation materials	none
prepared by	Alexander, M.
preservation temperature	-80 degrees Celsius
preservation type	tube
verbatim uncertainty	confident in available location data

User flagged issues

User Assertion Status:

Data quality tests

Test name	Result
Coordinate precision not valid	Failed
Geodetic datum assumed WGS84	Warning
Basis of record not supplied	Passed
Basis of record badly formed	Passed
Invalid collection date	Passed
Incomplete collection date	Passed
First of the month	Passed
Cultivated / escapee	Passed
Missing catalogue number	Passed
Data are generalised	Passed
Collection code not recognised	Passed
Institution code not recognised	Passed
Name not supplied	Passed
Kingdom not recognised	Passed
Name not recognised	Passed
Resource taxonomic scope mismatch	Passed
Invalid scientific name	Passed
Name not in national checklists	Passed
Decimal coordinates not supplied	Passed
Altitude out of range	Passed
Altitude value non-numeric	Passed
Altitude value supplied in feet	Passed
Coordinates are transposed	Passed
Coordinates are out of range for species	Passed
Supplied coordinates are zero	Passed
Zero latitude	Passed
Zero longitude	Passed
Supplied country not recognised	Passed
Coordinate uncertainty not valid	Passed
Missing coordinate precision	Passed
Precision / range mismatch	Passed
Coordinate uncertainty not specified	Passed
Location not supplied	Passed
Country inferred from coordinates	Passed
Supplied coordinates centre of state	Passed
Coordinates centre of country	Passed
Missing geodetic datum	Passed
Coordinates dont match supplied state	Passed
Habitat incorrect for species	Passed
Show/Hide 10 missing properties
Missing an identification qualifier	Missing
Missing name of person who identified the specimen/observation	Missing
Missing identification references	Missing
Missing identification date	Missing
Missing taxonomic rank	Missing
Missing name of person who georeferenced the occurrence	Missing
Missing georeferenced protocol	Missing
Missing georeferenced sources	Missing
Missing georeferenced verification status	Missing
Missing georeference date	Missing
Show/Hide 37 tests that have not been run
First of the century	Unchecked (lack of data)
Unrecognized geodetic datum	Unchecked (lack of data)
Unparseable verbatim coordinates	Unchecked (lack of data)
No collection date supplied	Unchecked (lack of data)
Min and max depth reversed	Unchecked (lack of data)
Min and max altitude reversed	Unchecked (lack of data)
First of the year	Unchecked (lack of data)
Occurrence status assumed to be present	Unchecked (lack of data)
Georeferenced after occurrence date	Unchecked (lack of data)
Type status not recognised	Unchecked (lack of data)
Depth out of range	Unchecked (lack of data)
Coordinates dont match supplied country	Unchecked (lack of data)
Day and month transposed	Unchecked (lack of data)
Possible duplicate record	Unchecked (lack of data)
Badly formed altitude	Unchecked (lack of data)
Media unrepresentative for taxon	Unchecked (lack of data)
Homonym issues with supplied name	Unchecked (lack of data)
unrecognisedOccurrenceStatus	Unchecked (lack of data)
Collector name unparseable	Unchecked (lack of data)
Invalid geodetic datum	Unchecked (lack of data)
Unable to convert UTM coordinates	Unchecked (lack of data)
Latitude is negated	Unchecked (lack of data)
Decimal latitude/longitude conversion failed	Unchecked (lack of data)
Media unrepresentative	Unchecked (lack of data)
Coordinate precision and uncertainty transposed	Unchecked (lack of data)
Depth value non-numeric	Unchecked (lack of data)
Coordinates converted to WGS84	Unchecked (lack of data)
Outside expert range for species	Unchecked (lack of data)
Date precision invalid	Unchecked (lack of data)
Coordinates derived from verbatim coordinates	Unchecked (lack of data)
Latitude Longitude calculated from grid reference	Unchecked (lack of data)
Image URL invalid	Unchecked (lack of data)
Identification date before occurrence date	Unchecked (lack of data)
Higher taxonomy missing	Unchecked (lack of data)
Longitude is negated	Unchecked (lack of data)
Depth value supplied in feet	Unchecked (lack of data)
Coordinates converted from UTM	Unchecked (lack of data)

Additional political boundaries information

Area Management
Fallow practice - dominant (area)	Fallow 3-9 months
Fallow practice - dominant (number)	Fallow 3-9 months
GER National Corridor	GER National Corridor
GER Southern Highlands	GER Southern Highlands
GER Standard Boundary	GER Standard Boundary
Global 200 priority ecoregions - Freshwater	Eastern Australia Rivers & Streams
Global 200 priority ecoregions - Terrestrial	Eastern Asutralia Temperate Forests
Great Eastern Ranges Initiative	GER Great Eastern Ranges Initiative
Irrigation practice - dominant	No irrigation
Land use	Urban intensive uses
NRM Regions 2010	Hawkesbury-Nepean
NRM Regions 2014	South East NSW
NRM Regions 2015	South East NSW
NRM Regions 2017	South East NSW
NRM Regions 2017 (Qld 2019)	South East NSW
Stubble practice - dominant (area)	Removed = cool burn
Stubble practice - dominant (number)	Four practices equal
Tillage practice - dominant (area)	No cultivation
Tillage practice - dominant (number)	No cultivation
Area management
National Landcare Program Management Units 2018	South East NSW
Biodiversity
Freshwater Ecoregions of the World	Eastern Coastal Australia
IBRA 6 Regions	Sydney Basin
IBRA 6 Sub Regions	Moss Vale
IBRA 7 Regions	Sydney Basin
IBRA 7 Subregions	Moss Vale
Terrestrial Ecoregional Boundaries	Eastern Australian Temperate Forests
World Anthropogenic Biomes (2000)	Mixed settlements
Climate
Agroclimatic classification of Australia	Moisture availability high in winter-spring, moderate in summer, most plant growth in spring
Koppen Climate Classification (All Classes)	Temperate: no dry season (warm summer)
Koppen Climate Classification (Major Classes)	Temperate
Fire
Fire regime niches	Pasture, cropland (temperate)
Hydrology
Drainage Divisions Level 1	South East Coast (NSW)
Drainage Divisions Level 2	HAWKESBURY RIVER
River Regions	HAWKESBURY RIVER
Marine
Marine Ecoregions of the World	Cape Howe
States including coastal waters	New South Wales (including Coastal Waters)
Political
ASGS Australian States and Territories	New South Wales
Australian States and Territories	New South Wales
Commonwealth Electoral Boundaries	Throsby
Local Government Areas 2011	Wingecarribee (A)
Local Government Areas 2012 deprecated	Wingecarribee
Local Government Areas PSMA 2018	WINGECARRIBEE SHIRE COUNCIL
NSW Local Land Services Regions	South East
PSMA ABS Census Indigenous Language Speakers by Area - I01B (2016)	11
PSMA ABS Census Selected Person Characteristics by Indigenous Status by Area - I01A (2016)	2781
PSMA ABS Greater Capital City Statistical Areas (2016)	REST OF NSW
PSMA ABS SA2 Statistical Areas (2016)	MOSS VALE - BERRIMA
PSMA ABS SA3 Statistical Areas (2016)	SOUTHERN HIGHLANDS
PSMA ABS SA4 Statistical Areas (2016)	SOUTHERN HIGHLANDS AND SHOALHAVEN
PSMA Commonwealth Electoral Boundaries (2016)	WHITLAM
PSMA Commonwealth Electoral Boundaries (2018)	WHITLAM
PSMA Indigenous Areas (2016)	SOUTHERN TABLELANDS
PSMA Indigenous Locations (2016)	WINGECARIBEE
PSMA Indigenous Regions (2016)	SOUTH-EASTERN NSW
PSMA Localities (2018)	MOSS VALE
PSMA Remoteness Areas (2016)	Inner Regional Australia
PSMA Section of State (2016)	OTHER URBAN
PSMA Section of State Range (2016)	5,000 TO 9,999
PSMA Significant Urban Area (2016)	BOWRAL - MITTAGONG
PSMA State Electoral Boundaries (2016)	LEGISLATIVE COUNCIL
PSMA State Electoral Boundaries (2018)	LEGISLATIVE COUNCIL
PSMA States (2016)	NEW SOUTH WALES
PSMA Urban Centre and Locality (2016)	MOSS VALE
Statistical Local Areas	Wingecarribee (A)
World Country Boundaries	Australia
Substrate
Geological Regions of Australia	Sydney Region
Surface Geology of Australia	Czbro
Topography
Physiographic Provinces of Australia	Macquarie Uplands Province
Physiographic Regions 2011	Hawkesbury-Shoalhaven Plateaus
Vegetation
Australia's Indigenous forest estate (2013) v2.0	Non-Indigenous, Native forest
Forests of Australia (2013) v2.0	Other native forest
Land cover	Built-up
NVIS 4.1 Major Vegetation Groups	Cleared, non-native vegetation, buildings
NVIS 4.1 Major Vegetation Subgroups	Cleared, non-native vegetation, buildings
Tenure of Australia's forests (2013) v2.0	Private Freehold
Vegetation - condition	Replaced
Vegetation types - native	Eucalypt open forests
Vegetation types - present	cleared, non-native vegetation, buildings

Environmental sampling for this location

Area Management
Natural resource management expenditure	8429158.0 $
Biodiversity
Acacia – Miller et al 2012 - 0.5 degree	1.0888
Amphibians (global) – Pyron & Wiens 2011 - 0.5 degree	4.4519
Endemism	0.008776981
Endemism (Non-marine)	0.009450003
Mammals – Fritz et al 2009 - 0.5 degree	0.3689
Migratory species (2008)	5.0 frequency
Occurrence Density	22202.0 frequency
Shannon Diversity (H)	5.167394 index
Species Richness	1259.0 frequency
Threatened communities (2008)	0.0 frequency
Threatened species (2008)	7.0 frequency
Climate
2030A1BMk35M: Aridity index - annual mean	0.6068535
2030A1BMk35M: Evaporation - month min	67.97 mm
2030A1BMk35M: Precipitation - annual mean	73.7475 mm
2030A1BMk35M: Precipitation - driest month	47.5 mm
2030A1BMk35M: Precipitation - equinox seasonality ratio	0.7657337
2030A1BMk35M: Precipitation - spring or autumn season	-0.3043832
2030A1BMk35M: Temperature - annual max mean	20.011667 degrees C
2030A1BMk35M: Temperature - annual min mean	8.9275 degrees C
2030A1BMk35M: Temperature - annual range	24.039978 degrees C
Aridity index - annual mean	0.8390642
Aridity index - month max	2.1630201
Aridity index - month min	0.38701263
Evaporation - annual mean	122.52056 (ml/5km x 5km pixel)
Evaporation - average	17678.0 ml
Evaporation - month max	209.2955 mm
Evaporation - month min	46.8 mm
Evaporation - variability	12.0 %
Growth index C3 macrotherm plants - annual mean	0.07 index
Growth index C3 mesotherm plants - annual mean	0.34 index
Growth index C4 megatherm plants - annual mean	0.05 index
Humidity - annual mean relative	82.09198 %
Humidity - annual mean relative 3pm	73.59009 %
Humidity - month max relative	88.20093 %
Humidity - month max relative 3pm	81.92128 %
Humidity - month min relative	67.11072 %
Humidity - month min relative 3pm	67.11072 %
Precipitation - annual	881.0 mm
Precipitation - annual (Bio12)	941.0 mm
Precipitation - annual mean	82.24785 mm
Precipitation - annual seasonality	0.12720425
Precipitation - coldest quarter (Bio19)	207.0 mm
Precipitation - driest month	60.0 mm
Precipitation - driest period (Bio14)	12.0 mm
Precipitation - driest quarter (Bio17)	190.0 mm
Precipitation - equinox seasonality ratio	0.7971954
Precipitation - seasonality (Bio15)	19.0 mm
Precipitation - spring or autumn season	-0.25323597
Precipitation - warmest quarter (Bio18)	260.0 mm
Precipitation - wettest month	101.22934 mm
Precipitation - wettest period (Bio13)	25.0 mm
Precipitation - wettest quarter (Bio16)	291.0 mm
Radiation - annual mean (Bio20)	16.5 MJ/m2/day
Radiation - seasonality (Bio23)	36.0
Radiation - warmest quarter (Bio26)	22.6 MJ/m2/day
Temperature - annual max mean	18.483334 degrees C
Temperature - annual mean (Bio01)	13.3 degrees C
Temperature - annual min mean	7.225 degrees C
Temperature - annual range	23.177063 degrees C
Temperature - annual range (Bio07)	24.2 degrees C
Temperature - coldest month min	1.75 degrees C
Temperature - coldest period min (Bio06)	1.6 degrees C
Temperature - coldest quarter mean (Bio11)	7.5 degrees C
Temperature - diurnal range mean (Bio02)	10.9 degrees C
Temperature - driest quarter mean (Bio09)	8.5 degrees C
Temperature - isothermality (Bio03)	0.45 %
Temperature - month hottest maximum	25.2 degrees C
Temperature - seasonality (Bio04)	1.55
Temperature - warmest month min	12.67 degrees C
Temperature - warmest period max (Bio05)	25.8 degrees C
Temperature - warmest quarter (Bio10)	18.9 degrees C
Temperature - wettest quarter mean (Bio08)	17.6 degrees C
Wind run - annual mean	147.76732 km/day
WorldClim: Precipitation - annual	1036.0 mm
WorldClim: Precipitation - coldest quarter	250.0 mm
WorldClim: Precipitation - driest month	58.0 mm
WorldClim: Precipitation - driest quarter	192.0 mm
WorldClim: Precipitation - seasonality	20.0
WorldClim: Precipitation - warmest quarter	284.0 mm
WorldClim: Precipitation - wettest month	116.0 mm
WorldClim: Precipitation - wettest quarter	313.0 mm
WorldClim: Temperature - annual mean	130.0 degrees C * 10
WorldClim: Temperature - annual range	236.0 degrees C * 10
WorldClim: Temperature - coldest month min	13.0 degrees C * 10
WorldClim: Temperature - coldest quarter mean	72.0 degrees C * 10
WorldClim: Temperature - diurnal range mean	113.0 degrees C * 10
WorldClim: Temperature - driest quarter mean	81.0 degrees C * 10
WorldClim: Temperature - isothermality	47.0 %
WorldClim: Temperature - seasonality	4342.0 standard deviation (degrees C * 10) * 100
WorldClim: Temperature - warmest month max	249.0 degrees C * 10
WorldClim: Temperature - warmest quarter mean	183.0 degrees C * 10
WorldClim: Temperature - wettest quarter mean	181.0 degrees C * 10
Distance
Distance - to any water (weighted)	0.0 degrees
Distance - to coast	0.4687217 km x 100
Distance - to non-permanent water (weighted)	0.0 degrees
Distance - to permanent water (weighted)	0.022360679 km
Euclidean Distance to Coast (metres)	22183.465 m
Remoteness index	0.67
Hydrology
Drainage - average	747.0 megalitres/5x5km/year
Drainage - variability	174.0 %
Runoff - average	1450.0 megalitres/5x5km/year
Water Observations From Space	0.43290043 Percentage
Social
Population - density SLA 2006 p/sqkm)	15.7 people/km^2
Substrate
2030A1BMk35M: Water stress index - month max	74.28917
ASRIS 0-1m Plant Available Water Capacity (250m raster)	95.0 mm
ASRIS 0-30cm Bulk Density (250m raster)	1.6 Mg/m3
ASRIS 0-30cm Clay Content (250m raster)	22.0 %
Bulk density	1.5536842 Mg/m^3
Carbon - organic	2.9970655 %
Clay %	40.842106 %
Hydrologic conductivity - average saturated	49.090908 mm/h
Moisture Index - annual mean (Bio28)	0.72
Moisture Index - highest quarter mean (Bio32)	0.97
Nutrient status	1.0 index
Ph - soil	4.0 ph
Soil depth	1.1 m
Soil pedality	2.8842106
Water holding capacity	44000.0 mm
Water stress index - month max	81.0
Weathering Intensity V2	4.879 Weathering Intensity Index
Topography
Aspect	67.0 degrees
Averaged Topographic Relief	96.958336 metres
Bathymetry and Topography 9 sec	680.0 m
Elevation	674.0 m
Topographic Slope (degrees)	0.42693737 degrees
Topographic relief	24.3902 m
Topographic slope (%)	1.330109 %
Vegetation
Enhanced Vegetation Index (2012-03-05)	0.2947 EVI
Fraction of Photosynthetically Active Radiation (fPAR)	56.0 %
Fractional Cover - Bare Soil (2012-03-05)	20.0 % Bare Soil
Fractional Cover - Non-persistent Vegetation (2012-03-05)	20.0 % Non-persistent Vegetation
Fractional Cover - Persistent Vegetation (2012-03-05)	61.0 % Persistent Vegetation
Gross Primary Productivity (2012-03-13)	0.0345 kg C/m^2
Leaf Area Index (LAI) - 2012-03-05	1.4 m^2 plant / m^2 ground
NDVI Mean	62.0 NDVI x 100
NPP Mean	9.0 tonnes/ha/yr
Normalized Difference Vegetation Index (2012-03-05)	0.4931 NDVI

Group	Field Name	Original Value	Processed Value
Classification	Name parse type		SCIENTIFIC
	Species		Mus musculus
	Name match metric		exactMatch
	Vernacular name	House Mouse	House Mouse
	Scientific name	Mus musculus	Mus musculus
	Class	Mammalia	Mammalia
	Genus id		urn:lsid:biodiversity.org.au:afd.taxon:dc63b745-b171-4d46-a99c-d96722d93930
	Taxon concept ID		urn:lsid:biodiversity.org.au:afd.taxon:107696b5-063c-4c09-a015-6edfdb6f4d52
	Kingdom id		urn:lsid:biodiversity.org.au:afd.taxon:4647863b-760d-4b59-aaa1-502c8cdf8d3c
	Left		203219
	Phylum	Chordata	Chordata
	Kingdom	Animalia	Animalia
	Class id		urn:lsid:biodiversity.org.au:afd.taxon:e9e7db31-04df-41fb-bd8d-e0b0f3c332d6
	Genus		Mus
	Phylum id		urn:lsid:biodiversity.org.au:afd.taxon:065f1da4-53cd-40b8-a396-80fa5c74dedd
	Order		Rodentia
	Taxon rank		species
	Specific epithet	musculus
	Order id		urn:lsid:biodiversity.org.au:afd.taxon:985cb64a-33d2-44fe-b806-8aa848fdafdf
	Species habitats		["Terrestrial"]
	Taxonomic issue		["noIssue"]
	Species id		urn:lsid:biodiversity.org.au:afd.taxon:107696b5-063c-4c09-a015-6edfdb6f4d52
	Family id		urn:lsid:biodiversity.org.au:afd.taxon:e92ab140-99ff-40e8-be6c-481747869360
	Family	Muridae	Muridae
	Taxon rank id		7000
	Right		203221
Event	Date precision		Day
	Event date	2018-02-16	2018-02-16
	Year		2018
	Verbatim event date	16/02/2018
	Day		16
	Month		02
Identification	Abcd identification qualifier		Not provided
Identification	Identification qualifier		Not provided
Occurrence	Collection ID	urn:lsid:biocol.org:col:34932
	Disposition	on loan
	Basis of record	MaterialSample	MaterialSample
	Sex	male
	Relationship of resource	same individual
	Rightsholder	CSIRO
	Dataset name	2017-2018 - Holleley FSP experiment
	Bibliographic citation	G47094
	Associated occurrences	ANWC:ANWC:M37839
	Establishment means	captive location
	Institution code	ANWC
	Occurrence status	present	present
	Preparations	liver
	Dataset ID	urn:anwc.csiro.au:collections:172
	Catalog number	G47094
	Collection code	GeneticSamples
Attribution	Collection uid		co16
	Data resource		Australian National Wildlife Collection provider for OZCAM
	Institution uid		in6
	Data hub uid		["dh1"]
	Collection name		Australian National Wildlife Collection
	Data provider uid		dp20
	Institution name		Commonwealth Scientific and Industrial Research Organisation
	License		CC-BY
	Provenance		Published dataset
	Data resource uid	dr341
	Data partner		OZCAM (Online Zoological Collections of Australian Museums) Provider
Location	Water body	not applicable
	Verbatim SRS	WGS84
	Coordinate precision	0.001
	Location remarks	Animal House
	Decimal latitude	-34.5488	-34.5488
	Local Government Area		Wingecarribee (A)
	Coordinate uncertainty in meters	10	10.0
	Verbatim locality	Australian BioResource
	Country	Australia	Australia
	Continent	Australia
	County	not applicable
	State province	New South Wales	New South Wales
	Decimal longitude	150.3742	150.3742
	Island group	not applicable
	Biome		Terrestrial
	Island	not applicable
	Locality	Australian BioResource
	Geodetic datum		EPSG:4326
	Verbatim elevation	683	683.0